Deniz Ö†, Ahmed M, Todd CD, Rio-Machin A, Dawson MA, Branco MR†. Endogenous retroviruses are a source of enhancers with oncogenic potential in acute myeloid leukemia. Nature Communications, 11 (1): 3506 (2020). † corresponding author. [PubMed]

Carrillo-Jimenez A*, Deniz Ö*, Niklison-Chirou M*, Bezerra-Salomao K, Stratoulias V, Amoroux VR, Ruiz R, Yip PK, Vilalta A, Cheray M, Scott-Egerton AM, Rivas E, Tayara K, Espinosa-Oliva AM, Shen X, Brown GC, Hajkova P, Joseph B, Venero JL, Branco MR, Burguillos MA. TET2 regulates the neuroinflammatory response in microglia. Cell Reports,15;29(3):697-713 (2019). * equal contribution [PubMed]

Deniz Ö, Frost JM, Branco MR. Regulation of transposable elements by DNA modifications. Nature Reviews Genetics, 20(7):417-431 (2019). [PubMed]

Todd CD, Deniz Ö, Taylor D, Branco MR. Functional evaluation of transposable elements as transcriptional enhancers in mouse embryonic and trophoblast stem cells. eLife, Apr 23;8 (2019). [PubMed]

Deniz Ö, de la Rica L, Cheng KC, Spensberger D, Branco MR. SETDB1 prevents TET2-dependent activation of IAP retroelements in na ve embryonic stem cells. Genome Biology, 19(1):6 (2018). [PubMed]

de la Rica L, Deniz Ö, Cheng KC, Todd CD, Cruz C, Houseley J, Branco MR. TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells. Genome Biology, 17:234 (2016). [PubMed]

Deniz Ö*, Flores O*, Aldea M, Soler-López M, Orozco M. Nucleosome architecture throughout the cell cycle. Sci. Rep., 6, 19729 (2016). * equal contribution [PubMed]

Flores O*, Deniz Ö*, Soler-López M, Orozco M. Fuzziness and noise in nucleosomal architecture. Nucleic Acids Res., 42, 4934–46 (2014). * equal contribution [PubMed]

Pérez A, Castellazzi CL, Battistini F, Collinet K, Flores O, Deniz Ö, Ruiz ML, Torrents D, Eritja R, Soler-López M, Orozco M. Impact of methylation on the physical properties of DNA. Biophys. J., 102, 2140–8 (2012). [PubMed]

Deniz Ö*, Flores O*, Battistini F, Pérez A, Soler-López M, Orozco M. Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast. BMC Genomics, 12, 489 (2011). * equal contribution [PubMed]